Variant report

Variant	rs608628
Chromosome Location	chr13:110870692-110870693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16975624	0.81[CEU][hapmap]
rs3783101	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1182	chr13:110829691-110875029	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110829600-110874400	Weak transcription	A549	lung
2	chr13:110830000-110870800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:110836400-110874200	Weak transcription	Esophagus	oesophagus
4	chr13:110846400-110879800	Weak transcription	Pancreas	Pancrea
5	chr13:110853600-110879800	Weak transcription	Gastric	stomach
6	chr13:110861400-110870800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:110865200-110871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:110865400-110874400	Weak transcription	Colonic Mucosa	Colon
9	chr13:110866000-110873400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:110866200-110874000	Weak transcription	NHEK	skin
11	chr13:110866200-110882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:110866400-110871000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:110866400-110885000	Weak transcription	Fetal Intestine Large	intestine
14	chr13:110866600-110871000	Enhancers	Left Ventricle	heart
15	chr13:110866600-110874200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:110866600-110874200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:110866600-110874400	Weak transcription	Fetal Intestine Small	intestine
18	chr13:110866800-110871400	Enhancers	Colon Smooth Muscle	Colon
19	chr13:110867000-110871800	Enhancers	Fetal Lung	lung
20	chr13:110867200-110871000	Enhancers	Adipose Nuclei	Adipose
21	chr13:110867200-110871600	Enhancers	Rectal Smooth Muscle	rectum
22	chr13:110867200-110871800	Enhancers	Fetal Muscle Leg	muscle
23	chr13:110867800-110870800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:110868000-110871200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr13:110868000-110871400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr13:110868000-110871600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr13:110868000-110871800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:110868200-110870800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:110868200-110871000	Enhancers	Brain Cingulate Gyrus	brain
30	chr13:110868200-110871200	Enhancers	Brain Substantia Nigra	brain
31	chr13:110868200-110871600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:110868200-110871600	Enhancers	Placenta	Placenta
33	chr13:110868200-110871600	Enhancers	Right Atrium	heart
34	chr13:110868200-110872000	Enhancers	NHDF-Ad	bronchial
35	chr13:110868400-110871200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr13:110868400-110871600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr13:110868400-110872000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr13:110868400-110874400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr13:110868400-110874400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr13:110868600-110881400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr13:110868800-110870800	Flanking Active TSS	Fetal Heart	heart
42	chr13:110868800-110871800	Enhancers	NHLF	lung
43	chr13:110869000-110871000	Enhancers	Brain Anterior Caudate	brain
44	chr13:110869000-110871200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:110869000-110871200	Enhancers	Brain Hippocampus Middle	brain
46	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:110869400-110872000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:110869400-110883600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:110869600-110871200	Genic enhancers	NH-A	brain
50	chr13:110869800-110870800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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