Variant report

Variant	rs60867981
Chromosome Location	chr11:9133373-9133374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11042134	1.00[AMR][1000 genomes]
rs2003885	1.00[AMR][1000 genomes]
rs2568038	1.00[AMR][1000 genomes]
rs2742524	1.00[AMR][1000 genomes]
rs7124619	1.00[AMR][1000 genomes]
rs74052371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9113600-9159800	Weak transcription	Right Ventricle	heart
2	chr11:9114200-9136200	Weak transcription	Fetal Heart	heart
3	chr11:9115000-9141800	Weak transcription	HSMM	muscle
4	chr11:9115200-9134400	Weak transcription	Fetal Stomach	stomach
5	chr11:9121800-9154800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:9125000-9142800	Weak transcription	Left Ventricle	heart
7	chr11:9128000-9134600	Weak transcription	Aorta	Aorta
8	chr11:9130800-9153600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:9131200-9133400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:9131200-9143000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:9132000-9153200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:9132800-9133600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:9133000-9133400	ZNF genes & repeats	Psoas Muscle	Psoas
14	chr11:9133000-9133800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:9133200-9133600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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