Variant report

Variant	rs60877609
Chromosome Location	chr8:91235556-91235557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91012457..91015215-chr8:91233847..91236431,2	K562	blood:
2	chr8:91176914..91178549-chr8:91234676..91237074,2	K562	blood:
3	chr8:91121306..91123004-chr8:91234013..91235686,2	K562	blood:
4	chr8:91012457..91016466-chr8:91233540..91237741,4	K562	blood:
5	chr8:91077672..91080611-chr8:91234474..91236679,2	K562	blood:
6	chr8:91210166..91212699-chr8:91233871..91237591,3	K562	blood:
7	chr8:91234288..91238197-chr8:91246865..91250561,3	K562	blood:
8	chr8:91231929..91234339-chr8:91235347..91237147,2	K562	blood:
9	chr8:91012660..91015157-chr8:91235154..91237814,2	MCF-7	breast:
10	chr8:91079623..91081768-chr8:91235463..91237230,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56728418	1.00[AMR][1000 genomes]
rs57279332	1.00[AMR][1000 genomes]
rs58471573	1.00[AMR][1000 genomes]
rs59218334	1.00[AMR][1000 genomes]
rs61425737	1.00[AMR][1000 genomes]
rs6982283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7821627	1.00[AMR][1000 genomes]
rs7843830	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91228400-91236800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:91229600-91238600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91232400-91236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:91233600-91235600	Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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