Variant report

Variant	rs60880568
Chromosome Location	chr16:81555892-81555893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81554501..81557421-chr16:81614817..81617531,2	MCF-7	breast:
2	chr16:81477278..81479557-chr16:81555810..81558008,2	MCF-7	breast:
3	chr16:81537304..81540257-chr16:81554887..81558623,3	MCF-7	breast:
4	chr16:81549027..81553526-chr16:81553827..81556992,4	MCF-7	breast:
5	chr16:81434653..81436470-chr16:81555326..81557688,2	MCF-7	breast:
6	chr16:81548752..81553118-chr16:81553470..81556973,6	K562	blood:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13331139	1.00[EUR][1000 genomes]
rs16955600	1.00[EUR][1000 genomes]
rs16955606	1.00[EUR][1000 genomes]
rs16955612	1.00[EUR][1000 genomes]
rs2925991	0.96[AFR][1000 genomes]
rs4243207	1.00[EUR][1000 genomes]
rs4889338	1.00[EUR][1000 genomes]
rs56360425	1.00[EUR][1000 genomes]
rs56787727	1.00[EUR][1000 genomes]
rs57177093	1.00[EUR][1000 genomes]
rs60095351	1.00[EUR][1000 genomes]
rs60730964	1.00[EUR][1000 genomes]
rs61079357	1.00[EUR][1000 genomes]
rs61293946	1.00[EUR][1000 genomes]
rs7191922	1.00[EUR][1000 genomes]
rs7191961	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7198651	1.00[EUR][1000 genomes]
rs73594488	1.00[EUR][1000 genomes]
rs73596424	1.00[EUR][1000 genomes]
rs73596429	1.00[EUR][1000 genomes]
rs73596439	1.00[EUR][1000 genomes]
rs73596448	1.00[EUR][1000 genomes]
rs73596482	1.00[EUR][1000 genomes]
rs73596490	1.00[EUR][1000 genomes]
rs73596500	1.00[EUR][1000 genomes]
rs73596501	1.00[EUR][1000 genomes]
rs73598433	1.00[EUR][1000 genomes]
rs73598441	1.00[EUR][1000 genomes]
rs74031207	1.00[EUR][1000 genomes]
rs74031208	1.00[EUR][1000 genomes]
rs74031210	1.00[EUR][1000 genomes]
rs8057329	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv457576	chr16:81525637-81579433	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573360	chr16:81525637-81579433	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81547400-81571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr16:81547600-81560000	Weak transcription	Colon Smooth Muscle	Colon
3	chr16:81547600-81564400	Weak transcription	Fetal Kidney	kidney
4	chr16:81547800-81557200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:81547800-81571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr16:81548000-81564200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:81548000-81564200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:81548200-81559600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:81548200-81560000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr16:81548200-81560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr16:81548800-81558000	Strong transcription	Fetal Stomach	stomach
12	chr16:81548800-81560400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:81548800-81567400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:81551000-81559600	Weak transcription	Fetal Lung	lung
15	chr16:81551400-81559000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr16:81551400-81559200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:81551400-81563800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr16:81551600-81557200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:81551800-81556800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr16:81551800-81557000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:81552000-81556800	Weak transcription	Osteobl	bone
22	chr16:81552200-81556800	Weak transcription	Fetal Intestine Large	intestine
23	chr16:81552200-81556800	Weak transcription	HSMM	muscle
24	chr16:81552200-81556800	Weak transcription	NH-A	brain
25	chr16:81552200-81557000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr16:81552200-81557200	Weak transcription	HSMMtube	muscle
27	chr16:81552200-81559200	Weak transcription	NHLF	lung
28	chr16:81552200-81559600	Weak transcription	Right Ventricle	heart
29	chr16:81552200-81560200	Weak transcription	Fetal Muscle Leg	muscle
30	chr16:81552200-81561000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:81552200-81564600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr16:81552400-81560200	Weak transcription	Ovary	ovary
33	chr16:81552800-81556000	Enhancers	Primary B cells from peripheral blood	blood
34	chr16:81552800-81556800	Enhancers	Fetal Thymus	thymus
35	chr16:81552800-81563400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr16:81553000-81557400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:81553200-81558000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:81553200-81560200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr16:81553200-81560200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr16:81553200-81562400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr16:81553400-81556000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr16:81553400-81556200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr16:81553400-81556800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:81553400-81556800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr16:81553400-81558400	Strong transcription	Fetal Intestine Small	intestine
46	chr16:81553600-81556000	Enhancers	Fetal Brain Male	brain
47	chr16:81553600-81556200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr16:81553600-81556600	Weak transcription	HMEC	breast
49	chr16:81553600-81556800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr16:81553600-81556800	Genic enhancers	A549	lung

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