Variant report

Variant	rs608862
Chromosome Location	chr9:15225188-15225189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs529670	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs579969	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591648	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs619105	0.88[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes]
rs653805	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs655099	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs655454	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
3	chr9:15182200-15229200	Weak transcription	Gastric	stomach
4	chr9:15185600-15225800	Weak transcription	Pancreas	Pancrea
5	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
7	chr9:15206000-15229200	Weak transcription	Ovary	ovary
8	chr9:15207600-15225600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:15210000-15231800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:15210600-15226200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:15211400-15229000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:15211400-15229000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:15211600-15226600	Weak transcription	HMEC	breast
14	chr9:15212000-15225400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:15212400-15225600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:15212800-15226000	Weak transcription	Liver	Liver
17	chr9:15213600-15225800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:15214800-15226000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:15215400-15227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:15220000-15225200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:15220000-15229200	Weak transcription	Fetal Kidney	kidney
22	chr9:15220000-15229200	Weak transcription	Small Intestine	intestine
23	chr9:15220400-15225200	Weak transcription	Psoas Muscle	Psoas
24	chr9:15221200-15225800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:15221200-15229200	Weak transcription	Aorta	Aorta
26	chr9:15221200-15242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:15221600-15226600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:15221800-15231200	Weak transcription	Fetal Intestine Small	intestine
29	chr9:15221800-15233000	Weak transcription	Osteobl	bone
30	chr9:15221800-15242800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:15222000-15226800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:15222200-15225400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:15222400-15225200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:15222600-15225200	Strong transcription	HepG2	liver
35	chr9:15222600-15225400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:15222600-15230200	Weak transcription	Left Ventricle	heart
37	chr9:15222800-15226000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:15223600-15228600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr9:15223600-15232000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:15223600-15232600	Weak transcription	Fetal Stomach	stomach
42	chr9:15223800-15226000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:15223800-15227600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:15223800-15235200	Weak transcription	Fetal Lung	lung
45	chr9:15224400-15227400	Weak transcription	Lung	lung
46	chr9:15224400-15242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr9:15224600-15227400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:15224600-15228400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:15224600-15228400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:15224600-15229200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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