Variant report

Variant	rs60891699
Chromosome Location	chr22:28652675-28652676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1072967	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16986346	0.86[ASN][1000 genomes]
rs5752718	0.91[ASN][1000 genomes]
rs5762504	0.83[ASN][1000 genomes]
rs5762508	0.84[ASN][1000 genomes]
rs5762540	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5762568	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5762634	0.84[ASN][1000 genomes]
rs5997354	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
2	chr22:28641000-28655800	Weak transcription	Fetal Kidney	kidney
3	chr22:28644000-28653200	Weak transcription	NHLF	lung
4	chr22:28644200-28656600	Weak transcription	Left Ventricle	heart
5	chr22:28644200-28661400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr22:28644400-28662400	Weak transcription	Psoas Muscle	Psoas
7	chr22:28644600-28655400	Weak transcription	Brain Substantia Nigra	brain
8	chr22:28645000-28655600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr22:28646000-28664000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:28651600-28663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr22:28651800-28690600	Weak transcription	Dnd41	blood
12	chr22:28652600-28653000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr22:28652600-28653000	ZNF genes & repeats	Fetal Muscle Leg	muscle
14	chr22:28652600-28653000	ZNF genes & repeats	Fetal Stomach	stomach
15	chr22:28652600-28653200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr22:28652600-28653200	ZNF genes & repeats	Fetal Lung	lung
17	chr22:28652600-28653600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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