Variant report

Variant	rs60903250
Chromosome Location	chr1:214721247-214721248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214721216..214723356-chr1:214748283..214749976,2	MCF-7	breast:

rs_ID	r²[population]
rs61030800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6676753	1.00[AMR][1000 genomes]
rs7516009	1.00[AMR][1000 genomes]
rs7553507	1.00[AMR][1000 genomes]

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214699200-214722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:214699200-214722400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:214714000-214722400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:214714000-214722400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:214714000-214722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:214714000-214722400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:214716000-214722200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:214716000-214722400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:214716000-214722400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:214716000-214722400	Weak transcription	Gastric	stomach
11	chr1:214716200-214721400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr1:214716200-214722400	Weak transcription	Fetal Stomach	stomach
13	chr1:214716400-214721400	Weak transcription	Ovary	ovary
14	chr1:214716600-214722200	Weak transcription	Fetal Heart	heart
15	chr1:214718200-214721800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:214718600-214722200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:214718600-214722800	Enhancers	Left Ventricle	heart
18	chr1:214718600-214723400	Enhancers	Stomach Mucosa	stomach
19	chr1:214718800-214722400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:214719000-214721400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:214719000-214721400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:214719000-214722200	Enhancers	Psoas Muscle	Psoas
23	chr1:214719200-214721400	Enhancers	Fetal Kidney	kidney
24	chr1:214719200-214721400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:214719200-214721600	Transcr. at gene 5' and 3'	NHEK	skin
26	chr1:214719600-214722200	Weak transcription	Right Ventricle	heart
27	chr1:214719600-214723200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:214719800-214721600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:214719800-214722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:214719800-214722400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr1:214719800-214722800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr1:214719800-214723600	Flanking Active TSS	HUVEC	blood vessel
33	chr1:214720000-214721600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:214720000-214722600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:214720000-214722800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr1:214720200-214721400	Enhancers	NHDF-Ad	bronchial
37	chr1:214720200-214722400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr1:214720400-214721400	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr1:214720600-214721400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214720600-214721400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:214720600-214721600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr1:214720600-214721600	Transcr. at gene 5' and 3'	Osteobl	bone
43	chr1:214720600-214722200	Enhancers	NHLF	lung
44	chr1:214720600-214722400	Flanking Active TSS	HMEC	breast
45	chr1:214720600-214722600	Enhancers	Colon Smooth Muscle	Colon
46	chr1:214720600-214723000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr1:214720600-214723000	Enhancers	Fetal Lung	lung
48	chr1:214720800-214721400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr1:214720800-214721600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr1:214720800-214721800	Genic enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links