Variant report

Variant	rs60905645
Chromosome Location	chr8:132325126-132325127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10113834	1.00[EUR][1000 genomes]
rs56942698	1.00[EUR][1000 genomes]
rs59322818	1.00[EUR][1000 genomes]
rs73718610	1.00[EUR][1000 genomes]
rs73720066	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv491831	chr8:132161619-132539748	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1028783	chr8:132261833-132345698	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv523000	chr8:132304508-132329300	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv521358	chr8:132304508-132352151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:132321000-132326400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:132321200-132325600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
3	chr8:132321400-132325400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr8:132321600-132326200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:132322400-132325400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr8:132322400-132325600	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr8:132322400-132326000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr8:132322800-132331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:132324200-132326400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:132324600-132328000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:132324800-132326800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:132324800-132327800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:132324800-132330000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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