Variant report

Variant	rs6091799
Chromosome Location	chr20:52597427-52597428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:52596990..52599653-chr7:102503790..102506770,2	MCF-7	breast:
2	chr20:52595597..52599294-chr20:52683836..52687749,4	MCF-7	breast:
3	chr11:72258665..72259621-chr20:52596884..52597756,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265595	Chromatin interaction
ENSG00000064787	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1034843	0.90[ASN][1000 genomes]
rs208364	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2276492	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2276508	0.95[ASN][1000 genomes]
rs2276511	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2276512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2299727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs2299733	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs2299736	0.95[ASN][1000 genomes]
rs36030456	0.88[ASN][1000 genomes]
rs406691	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4809948	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4811488	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6091791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6091792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6091796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6097693	0.95[ASN][1000 genomes]
rs6097694	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs6097695	0.90[ASN][1000 genomes]
rs6097696	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6097697	0.95[ASN][1000 genomes]
rs73124062	0.81[EUR][1000 genomes]
rs73124072	0.81[EUR][1000 genomes]
rs73124078	0.81[EUR][1000 genomes]
rs73133412	0.81[EUR][1000 genomes]
rs73133414	0.81[EUR][1000 genomes]
rs73137783	0.81[EUR][1000 genomes]
rs73137786	0.81[EUR][1000 genomes]
rs73137796	0.81[EUR][1000 genomes]
rs73137798	0.81[EUR][1000 genomes]
rs73140332	0.81[EUR][1000 genomes]
rs73140334	0.81[EUR][1000 genomes]
rs73140343	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52566400-52644800	Weak transcription	Gastric	stomach
2	chr20:52580800-52600000	Weak transcription	Stomach Mucosa	stomach
3	chr20:52581200-52610600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr20:52592000-52599600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr20:52592800-52599600	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:52593000-52600800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr20:52593200-52601000	Weak transcription	Brain Substantia Nigra	brain
8	chr20:52596000-52597600	Enhancers	Fetal Stomach	stomach
9	chr20:52596400-52601400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr20:52597000-52599800	Weak transcription	HSMMtube	muscle

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