Variant report

Variant	rs60918375
Chromosome Location	chr3:157956799-157956800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58200556	1.00[AMR][1000 genomes]
rs60033568	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60338827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441180	1.00[AMR][1000 genomes]
rs6794264	1.00[AMR][1000 genomes]
rs7629044	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640632	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:157927000-157968800	Weak transcription	Psoas Muscle	Psoas
5	chr3:157933800-157957200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:157936800-157962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:157938200-157959000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:157938200-157961800	Weak transcription	Primary T cells from cord blood	blood
9	chr3:157948200-157970600	Weak transcription	Dnd41	blood
10	chr3:157949400-157970400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:157952200-157956800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:157953400-157960000	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:157953800-157957600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157953800-157974000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:157955400-157967000	Weak transcription	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links