Variant report

Variant	rs60931562
Chromosome Location	chr4:69808885-69808886
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10027817	0.84[EUR][1000 genomes]
rs10447075	0.84[ASN][1000 genomes]
rs10447076	0.84[ASN][1000 genomes]
rs10447077	0.83[ASN][1000 genomes]
rs1075100	0.92[ASN][1000 genomes]
rs11249517	0.84[EUR][1000 genomes]
rs11249518	0.85[EUR][1000 genomes]
rs12505263	0.85[EUR][1000 genomes]
rs12719832	0.83[EUR][1000 genomes]
rs12719833	0.83[EUR][1000 genomes]
rs12719834	0.83[EUR][1000 genomes]
rs12719835	0.83[EUR][1000 genomes]
rs1458229	0.84[EUR][1000 genomes]
rs1458230	0.85[EUR][1000 genomes]
rs1458238	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1458240	0.91[ASN][1000 genomes]
rs1598902	0.91[ASN][1000 genomes]
rs1598903	0.86[EUR][1000 genomes]
rs17147016	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1841050	0.83[ASN][1000 genomes]
rs1841051	0.83[ASN][1000 genomes]
rs1902936	0.84[EUR][1000 genomes]
rs2013866	0.83[EUR][1000 genomes]
rs2018024	0.83[ASN][1000 genomes]
rs2168842	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2199039	0.83[EUR][1000 genomes]
rs2199040	0.84[EUR][1000 genomes]
rs2290764	0.83[ASN][1000 genomes]
rs2290765	0.80[ASN][1000 genomes]
rs2331569	0.84[ASN][1000 genomes]
rs2331570	0.84[ASN][1000 genomes]
rs28485675	0.85[EUR][1000 genomes]
rs35470687	0.83[ASN][1000 genomes]
rs36006127	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3749510	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3749514	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3886642	0.86[EUR][1000 genomes]
rs3886643	0.86[EUR][1000 genomes]
rs4146121	0.84[EUR][1000 genomes]
rs4467643	0.82[ASN][1000 genomes]
rs4487432	0.84[EUR][1000 genomes]
rs4590113	0.84[ASN][1000 genomes]
rs4694487	0.83[ASN][1000 genomes]
rs57547462	0.83[ASN][1000 genomes]
rs58016259	0.83[ASN][1000 genomes]
rs59300882	0.82[ASN][1000 genomes]
rs59449984	0.83[ASN][1000 genomes]
rs59590628	0.91[ASN][1000 genomes]
rs61021826	0.83[ASN][1000 genomes]
rs61235442	0.83[ASN][1000 genomes]
rs61416981	0.83[ASN][1000 genomes]
rs6812186	0.84[EUR][1000 genomes]
rs6812415	0.83[EUR][1000 genomes]
rs6817568	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6833024	0.92[ASN][1000 genomes]
rs6847948	0.86[EUR][1000 genomes]
rs7440384	0.84[ASN][1000 genomes]
rs7679122	0.86[EUR][1000 genomes]
rs7690181	0.86[EUR][1000 genomes]
rs7695476	0.86[EUR][1000 genomes]
rs988887	0.85[EUR][1000 genomes]
rs9998014	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv3398036	chr4:69700493-69841391	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv436447	chr4:69743339-69851390	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv4372	chr4:69764499-69810115	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv967758	chr4:69780530-69870183	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv829962	chr4:69786869-69910283	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	esv3430337	chr4:69807263-69809311	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3405821	chr4:69807613-69808911	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69792400-69812600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:69794600-69809400	Weak transcription	Pancreas	Pancrea
3	chr4:69796400-69814400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:69796600-69813800	Weak transcription	Liver	Liver
5	chr4:69804400-69809400	Weak transcription	HepG2	liver
6	chr4:69806000-69809400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:69807000-69812600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:69807400-69809200	Weak transcription	Fetal Intestine Large	intestine
9	chr4:69807400-69812200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:69808600-69819600	Weak transcription	Small Intestine	intestine

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