Variant report

Variant	rs60931843
Chromosome Location	chr18:39062959-39062960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16974839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975008	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975055	1.00[AMR][1000 genomes]
rs16975082	1.00[AMR][1000 genomes]
rs16975085	1.00[AMR][1000 genomes]
rs16975099	1.00[AMR][1000 genomes]
rs59084822	1.00[AMR][1000 genomes]
rs73444567	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73444592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450744	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450745	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450772	1.00[AMR][1000 genomes]
rs73450794	1.00[AMR][1000 genomes]
rs73452787	1.00[AMR][1000 genomes]
rs73454808	1.00[AMR][1000 genomes]
rs73454810	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39046800-39063000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:39051200-39072000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:39062600-39064000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:39062800-39063200	Enhancers	Fetal Brain Male	brain
5	chr18:39062800-39063800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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