Variant report

Variant	rs6093581
Chromosome Location	chr20:40787835-40787836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:40584778..40585687-chr20:40787476..40788453,2	MCF-7	breast:
2	chr20:40786474..40788670-chr7:2576513..2579220,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10084509	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986561	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16986584	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4254560	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4383399	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4404341	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4404342	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4407308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482556	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56061038	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56284628	0.81[AFR][1000 genomes]
rs56994977	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6016697	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6016698	0.83[YRI][hapmap]
rs6016699	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6016700	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030000	1.00[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030001	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030002	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030004	1.00[EUR][1000 genomes]
rs6030007	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030009	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6030014	0.83[YRI][hapmap]
rs60708559	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6093579	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6093580	1.00[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6102693	0.89[YRI][hapmap]
rs6102694	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7274169	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7344075	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8123724	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40784800-40788000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:40785800-40788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr20:40785800-40788600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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