Variant report

Variant	rs60942920
Chromosome Location	chr7:103272686-103272687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr7:103272657-103272826	K562	blood:	n/a	n/a
2	ATF1	chr7:103272544-103272989	K562	blood:	n/a	n/a
3	RCOR1	chr7:103272540-103272740	K562	blood:	n/a	n/a
4	CTCF	chr7:103272581-103272705	K562	blood:	n/a	n/a
5	CTCF	chr7:103272540-103272690	HPF	lung:	n/a	n/a
6	ARID3A	chr7:103272498-103272859	K562	blood:	n/a	n/a
7	CTCF	chr7:103272580-103272730	HPAF	blood vessel:	n/a	n/a
8	CTCF	chr7:103272507-103272814	K562	blood:	n/a	n/a
9	JUND	chr7:103272527-103272811	K562	blood:	n/a	n/a
10	CTCF	chr7:103272580-103272730	HRPEpiC	eye:	n/a	n/a
11	BACH1	chr7:103272623-103272854	K562	blood:	n/a	n/a
12	JUN	chr7:103272576-103272831	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103270998..103273560-chr7:103345066..103347137,2	K562	blood:
2	chr17:62024047..62024737-chr7:103272103..103272828,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3808027	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7783216	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831085	chr7:103140672-103342388	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103268400-103273600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:103271200-103275800	Weak transcription	HepG2	liver
3	chr7:103271200-103276800	Weak transcription	NHLF	lung
4	chr7:103271200-103277000	Weak transcription	NHDF-Ad	bronchial
5	chr7:103271600-103272800	Weak transcription	HMEC	breast
6	chr7:103272400-103273000	Genic enhancers	K562	blood
7	chr7:103272400-103274800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:103272600-103273000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:103272600-103273800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:103272600-103273800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:103272600-103273800	Enhancers	Osteobl	bone
12	chr7:103272600-103274200	Enhancers	NH-A	brain
13	chr7:103272600-103274400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:103272600-103274400	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links