Variant report

Variant	rs60949010
Chromosome Location	chr13:51696947-51696948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11843589	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12184751	0.99[ASN][1000 genomes]
rs12428867	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17075329	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4497566	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57981325	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59800527	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6561615	1.00[ASN][1000 genomes]
rs74085525	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74085534	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74085539	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9596458	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9596459	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9596460	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51690000-51697000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:51691800-51697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51692600-51697000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51692600-51697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:51693200-51697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:51693800-51697000	Weak transcription	Pancreas	Pancrea
8	chr13:51695600-51697000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:51696600-51697400	Enhancers	HepG2	liver
10	chr13:51696600-51700200	Enhancers	Liver	Liver
11	chr13:51696800-51697200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:51696800-51697200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
13	chr13:51696800-51697400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:51696800-51697400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:51696800-51697600	Enhancers	Fetal Kidney	kidney
16	chr13:51696800-51697800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:51696800-51697800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:51696800-51700000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:51696800-51700400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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