Variant report

Variant	rs60957449
Chromosome Location	chr16:81110151-81110152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr16:81110003-81111334	MCF-7	breast:	n/a	n/a
2	ZNF143	chr16:81110137-81111196	K562	blood:	n/a	n/a
3	MAX	chr16:81110108-81111241	A549	lung:	n/a	chr16:81110826-81110835
4	MAX	chr16:81109970-81111207	ECC-1	luminal epithelium:	n/a	chr16:81110826-81110835
5	POLR2A	chr16:81110051-81111492	Hela-S3	cervix:	n/a	n/a
6	MAX	chr16:81110012-81111238	SK-N-SH	brain:	n/a	chr16:81110826-81110835
7	MAX	chr16:81110103-81111261	HepG2	liver:	n/a	chr16:81110826-81110835
8	TAF1	chr16:81110150-81111422	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr16:81110063-81111091	H1-hESC	embryonic stem cell:	n/a	chr16:81110826-81110835
10	RCOR1	chr16:81110032-81111089	K562	blood:	n/a	n/a
11	GABPA	chr16:81110151-81111300	K562	blood:	n/a	n/a
12	MYC	chr16:81109878-81110397	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr16:81110124-81111815	IMR90	lung:	n/a	n/a
14	SMC3	chr16:81110117-81110538	HepG2	liver:	n/a	n/a
15	NRF1	chr16:81110144-81110454	GM12878	blood:	n/a	n/a
16	RELA	chr16:81110063-81111175	GM15510	blood:	n/a	n/a
17	SIN3AK20	chr16:81110107-81111076	HepG2	liver:	n/a	n/a
18	MAZ	chr16:81110103-81111286	K562	blood:	n/a	chr16:81110826-81110835
19	POLR2A	chr16:81110063-81111352	HCT-116	colon:	n/a	n/a
20	MXI1	chr16:81110117-81111280	GM12878	blood:	n/a	n/a
21	POLR2A	chr16:81110064-81111496	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr16:81109971-81111422	SK-N-MC	brain:	n/a	n/a
23	CREB1	chr16:81110120-81111289	H1-hESC	embryonic stem cell:	n/a	n/a
24	RELA	chr16:81110142-81111078	GM18951	blood:	n/a	n/a
25	MYC	chr16:81110019-81111263	K562	blood:	n/a	chr16:81110826-81110835
26	E2F6	chr16:81109998-81110585	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr16:81110149-81110377	HepG2	liver:	n/a	n/a
28	MAFK	chr16:81110149-81110893	HepG2	liver:	n/a	n/a
29	ELF1	chr16:81110103-81111245	GM12878	blood:	n/a	n/a
30	KAP1	chr16:81110056-81111275	HEK293	kidney:	n/a	n/a
31	GTF2F1	chr16:81110144-81111167	Hela-S3	cervix:	n/a	n/a
32	MXI1	chr16:81110089-81111098	K562	blood:	n/a	n/a
33	TBL1XR1	chr16:81110145-81111276	GM12878	blood:	n/a	n/a
34	MAFK	chr16:81110095-81110814	Hela-S3	cervix:	n/a	n/a
35	MYC	chr16:81110061-81111345	NB4	blood:	n/a	chr16:81110826-81110835
36	POLR2A	chr16:81110050-81111343	U87	brain:	n/a	n/a
37	MYC	chr16:81110100-81111313	K562	blood:	n/a	chr16:81110826-81110835
38	POLR2A	chr16:81110093-81111329	H1-neurons	neurons:	n/a	n/a
39	MAZ	chr16:81110111-81111242	GM12878	blood:	n/a	chr16:81110826-81110835
40	HEY1	chr16:81109984-81111389	HepG2	liver:	n/a	chr16:81110851-81110866
41	POLR2A	chr16:81110071-81111504	PFSK-1	brain:	n/a	n/a
42	TEAD4	chr16:81110111-81111223	K562	blood:	n/a	n/a
43	SP1	chr16:81110106-81111062	GM12878	blood:	n/a	chr16:81110327-81110336 chr16:81110327-81110337 chr16:81110326-81110338 chr16:81110327-81110336 chr16:81110850-81110859 chr16:81110846-81110860 chr16:81110327-81110341 chr16:81110346-81110356 chr16:81110328-81110337 chr16:81110327-81110337 chr16:81110346-81110356 chr16:81110851-81110860 chr16:81110849-81110861 chr16:81110849-81110861 chr16:81110326-81110338
44	CREB1	chr16:81110077-81111343	GM12878	blood:	n/a	n/a
45	POLR2A	chr16:81110098-81111325	ECC-1	luminal epithelium:	n/a	n/a
46	MAX	chr16:81110044-81110457	H1-hESC	embryonic stem cell:	n/a	n/a
47	TBP	chr16:81110066-81111247	K562	blood:	n/a	n/a
48	RFX5	chr16:81110023-81111168	HepG2	liver:	n/a	n/a
49	POLR2A	chr16:81110141-81111439	K562	blood:	n/a	n/a
50	NR2F2	chr16:81110086-81111229	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:81109459..81113813-chr16:81119137..81125158,9	MCF-7	breast:
2	chr16:81067728..81071580-chr16:81109086..81113987,13	K562	blood:
3	chr16:81109242..81112738-chr16:81125910..81131139,12	MCF-7	breast:
4	chr16:81096522..81104265-chr16:81107324..81112531,10	MCF-7	breast:
5	chr16:81039722..81044457-chr16:81106699..81112118,5	MCF-7	breast:
6	chr16:81102378..81105736-chr16:81109275..81112562,6	K562	blood:
7	chr16:81109518..81111024-chr16:81347327..81349963,2	K562	blood:
8	chr16:81110094..81110965-chr7:95063901..95064577,2	Hela-S3	cervix:
9	chr16:81038376..81043277-chr16:81108432..81112403,6	K562	blood:
10	chr16:81038376..81042418-chr16:81108432..81111584,4	K562	blood:
11	chr16:81109109..81111856-chr16:81126620..81130593,5	MCF-7	breast:
12	chr16:81068163..81070898-chr16:81108747..81112001,7	MCF-7	breast:
13	chr16:81067878..81071089-chr16:81109086..81112093,6	K562	blood:
14	chr16:81109214..81111850-chr16:81221258..81223565,2	MCF-7	breast:
15	chr16:81102378..81105736-chr16:81109334..81111887,5	K562	blood:
16	chr16:81039624..81041255-chr16:81107979..81110813,2	MCF-7	breast:
17	chr16:81068891..81069786-chr16:81109296..81110385,4	MCF-7	breast:
18	chr16:81109389..81113385-chr16:81129533..81131576,3	K562	blood:
19	chr16:81104152..81107798-chr16:81108570..81111013,4	MCF-7	breast:
20	chr16:81108969..81114076-chr16:81128464..81132360,7	K562	blood:
21	chr16:81067084..81072191-chr16:81106033..81112629,21	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATMIN-3	chr16:81110029-81110203	ENSG00000261838.1
2	lnc-ATMIN-3	chr16:81110029-81110203	ENSG00000261838.1

Variant related genes	Relation type
ENSG00000245059	TF binding region
ENSG00000261838	Chromatin interaction
ENSG00000166473	Chromatin interaction
ENSG00000261609	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000140905	Chromatin interaction
ENSG00000260643	Chromatin interaction
ENSG00000105854	Chromatin interaction
ENSG00000166451	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000103121	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61299662	1.00[AMR][1000 genomes]
rs61426389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81080400-81110200	Weak transcription	Ovary	ovary
2	chr16:81095800-81110200	Weak transcription	Fetal Stomach	stomach
3	chr16:81106600-81110200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:81107600-81110200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:81109600-81110400	Flanking Active TSS	Dnd41	blood
6	chr16:81109800-81110200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:81109800-81110200	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr16:81109800-81110200	Enhancers	Primary hematopoietic stem cells	blood
9	chr16:81109800-81110200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr16:81109800-81110200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:81109800-81110200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:81109800-81110200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr16:81109800-81110200	Flanking Active TSS	Brain Cingulate Gyrus	brain
14	chr16:81109800-81110200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr16:81109800-81110200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:81109800-81110200	Flanking Active TSS	GM12878-XiMat	blood
17	chr16:81109800-81110200	Flanking Active TSS	Hela-S3	cervix
18	chr16:81109800-81110200	Flanking Active TSS	HepG2	liver
19	chr16:81109800-81110200	Flanking Active TSS	HMEC	breast
20	chr16:81109800-81110400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr16:81109800-81110400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:81109800-81110400	Flanking Active TSS	K562	blood
23	chr16:81109800-81110400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr16:81109800-81110400	Flanking Active TSS	NHEK	skin
25	chr16:81109800-81111000	Active TSS	Stomach Smooth Muscle	stomach
26	chr16:81109800-81111200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:81109800-81111200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:81109800-81111200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr16:81109800-81111200	Active TSS	Brain Anterior Caudate	brain
30	chr16:81109800-81111200	Active TSS	Colon Smooth Muscle	Colon
31	chr16:81109800-81111400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr16:81109800-81111400	Active TSS	H1 Cell Line	embryonic stem cell
33	chr16:81109800-81111400	Active TSS	H9 Cell Line	embryonic stem cell
34	chr16:81109800-81111400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:81109800-81111400	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr16:81109800-81111400	Active TSS	Fetal Brain Female	brain
37	chr16:81109800-81111400	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr16:81109800-81111600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr16:81109800-81111600	Active TSS	Brain Angular Gyrus	brain
40	chr16:81109800-81111800	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr16:81109800-81112000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr16:81110000-81110200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr16:81110000-81110200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr16:81110000-81110200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr16:81110000-81110200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr16:81110000-81110200	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr16:81110000-81110200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr16:81110000-81110200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr16:81110000-81110200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:81110000-81110200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links