Variant report

Variant	rs60958359
Chromosome Location	chr15:72530803-72530804
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72526714..72532102-chr15:72561781..72566953,8	K562	blood:
2	chr15:72527394..72534715-chr15:72562814..72566489,12	MCF-7	breast:
3	chr15:72518424..72531344-chr15:72562525..72571046,23	K562	blood:
4	chr15:72530629..72532313-chr15:72532642..72534187,2	K562	blood:
5	chr15:71405378..71408247-chr15:72528741..72531638,2	MCF-7	breast:
6	chr15:72529508..72531983-chr15:72540363..72542642,2	MCF-7	breast:
7	chr15:72527933..72532527-chr15:72562459..72567122,12	MCF-7	breast:
8	chr15:72530045..72531562-chr15:72556046..72558443,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225362	Chromatin interaction
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs35014122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58115764	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58123703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60149262	1.00[AMR][1000 genomes]
rs60311069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028492	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039365	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524400-72532000	Weak transcription	Brain Angular Gyrus	brain
2	chr15:72524400-72533000	Weak transcription	Gastric	stomach
3	chr15:72524400-72533200	Weak transcription	Ovary	ovary
4	chr15:72524400-72533400	Weak transcription	Pancreas	Pancrea
5	chr15:72524600-72532200	Weak transcription	Liver	Liver
6	chr15:72524600-72532600	Weak transcription	Right Ventricle	heart
7	chr15:72524600-72533000	Weak transcription	Aorta	Aorta
8	chr15:72524800-72533000	Weak transcription	Thymus	Thymus
9	chr15:72524800-72533400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:72524800-72533400	Weak transcription	Brain Substantia Nigra	brain
11	chr15:72524800-72533600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:72525000-72531000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:72525000-72532800	Weak transcription	Brain Germinal Matrix	brain
15	chr15:72525000-72533000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr15:72525000-72533400	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:72525000-72533400	Weak transcription	Fetal Kidney	kidney
18	chr15:72525000-72533400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:72525200-72532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:72525200-72532200	Weak transcription	Fetal Intestine Large	intestine
21	chr15:72525200-72533000	Weak transcription	Fetal Brain Male	brain
22	chr15:72525200-72533000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:72525200-72533200	Weak transcription	Fetal Intestine Small	intestine
24	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
25	chr15:72525600-72531000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:72525600-72531200	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:72525600-72532200	Weak transcription	Fetal Lung	lung
28	chr15:72525600-72532200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:72525600-72532400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:72528800-72531200	Enhancers	Primary hematopoietic stem cells	blood
31	chr15:72529200-72536200	Strong transcription	Fetal Stomach	stomach
32	chr15:72529400-72531600	Weak transcription	Fetal Brain Female	brain
33	chr15:72529600-72532000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:72529600-72532200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:72529600-72533000	Weak transcription	Spleen	Spleen
36	chr15:72529600-72533400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:72529800-72531000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:72529800-72531000	Weak transcription	Placenta	Placenta
39	chr15:72529800-72531200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:72529800-72532600	Weak transcription	Left Ventricle	heart
41	chr15:72529800-72532800	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:72529800-72533200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:72529800-72533400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:72530000-72531000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:72530000-72531000	Enhancers	HepG2	liver
46	chr15:72530000-72531000	Enhancers	HMEC	breast
47	chr15:72530000-72531000	Enhancers	HSMM	muscle
48	chr15:72530000-72531000	Enhancers	NHDF-Ad	bronchial
49	chr15:72530000-72531200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:72530000-72531200	Enhancers	Dnd41	blood

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