Variant report

Variant	rs60960429
Chromosome Location	chr9:95972644-95972645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95969895..95975601-chr9:95984404..95988658,5	MCF-7	breast:
2	chr9:95965438..95972862-chr9:95973191..95979158,8	MCF-7	breast:
3	chr9:95963232..95968490-chr9:95968804..95973983,9	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1105079	0.91[AFR][1000 genomes]
rs12115586	1.00[EUR][1000 genomes]
rs1539669	0.87[AFR][1000 genomes]
rs56793625	1.00[EUR][1000 genomes]
rs58436998	1.00[EUR][1000 genomes]
rs7028091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3372585	chr9:95968731-95972929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95955800-95985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:95957000-95973400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95958200-95972800	Enhancers	Left Ventricle	heart
4	chr9:95958200-95975600	Enhancers	Pancreas	Pancrea
5	chr9:95960600-95975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:95962200-95973400	Enhancers	Right Ventricle	heart
7	chr9:95962800-95975600	Enhancers	Fetal Intestine Large	intestine
8	chr9:95963400-95972800	Enhancers	Psoas Muscle	Psoas
9	chr9:95965800-95973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:95966200-95973000	Enhancers	Colonic Mucosa	Colon
11	chr9:95967600-95973200	Genic enhancers	Fetal Intestine Small	intestine
12	chr9:95968800-95973600	Enhancers	Placenta	Placenta
13	chr9:95969200-95975200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:95969800-95976800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:95970200-95972800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr9:95971000-95973000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:95971000-95973200	Enhancers	Fetal Heart	heart
18	chr9:95971000-95973200	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:95971000-95979800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:95971000-95979800	Weak transcription	Small Intestine	intestine
21	chr9:95971000-95981400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:95971200-95972800	Weak transcription	Lung	lung
23	chr9:95971200-95974000	Weak transcription	Fetal Kidney	kidney
24	chr9:95971200-95974800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:95971200-95985800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:95971600-95976800	Weak transcription	Fetal Brain Female	brain
27	chr9:95971600-95979600	Weak transcription	Spleen	Spleen
28	chr9:95972000-95973000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr9:95972000-95973400	Enhancers	HepG2	liver
30	chr9:95972000-95975000	Enhancers	Gastric	stomach
31	chr9:95972200-95973600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr9:95972400-95974000	Weak transcription	Right Atrium	heart
33	chr9:95972600-95972800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:95972600-95973000	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr9:95972600-95975000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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