Variant report

Variant	rs60962272
Chromosome Location	chr9:13607842-13607843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13607383..13609479-chr9:13614274..13617159,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12003833	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1017792	chr9:13529680-13654107	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1026786	chr9:13530105-13627116	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892586	chr9:13601074-13621142	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13604200-13608000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:13605000-13608200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:13605600-13608400	Enhancers	Fetal Heart	heart
4	chr9:13606000-13608000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:13606200-13608000	Enhancers	Adipose Nuclei	Adipose
6	chr9:13606200-13608200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:13606200-13609200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr9:13606200-13609200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr9:13606400-13608000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:13606400-13608000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:13606400-13608200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:13606400-13608400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:13606400-13608400	Enhancers	Rectal Smooth Muscle	rectum
14	chr9:13606400-13609200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:13606400-13609200	Enhancers	Fetal Lung	lung
16	chr9:13606600-13608800	Enhancers	Fetal Stomach	stomach
17	chr9:13606800-13608800	Enhancers	Fetal Muscle Leg	muscle
18	chr9:13607000-13608000	Weak transcription	Aorta	Aorta
19	chr9:13607200-13608000	Enhancers	Fetal Brain Female	brain
20	chr9:13607200-13608200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:13607200-13608800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:13607200-13610000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:13607400-13608000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:13607400-13608000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:13607400-13608000	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr9:13607400-13608200	Enhancers	Brain Substantia Nigra	brain
27	chr9:13607400-13608400	Enhancers	Fetal Brain Male	brain
28	chr9:13607400-13608800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:13607400-13608800	Enhancers	Fetal Kidney	kidney
30	chr9:13607400-13609200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:13607400-13609800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:13607400-13610800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:13607600-13608000	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr9:13607600-13608000	Enhancers	Brain Germinal Matrix	brain
35	chr9:13607600-13608000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr9:13607600-13608000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr9:13607600-13608200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr9:13607600-13608200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr9:13607600-13608200	Enhancers	Brain Cingulate Gyrus	brain
40	chr9:13607600-13608800	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr9:13607600-13609200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:13607600-13609200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:13607800-13608000	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr9:13607800-13608000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:13607800-13608000	Enhancers	Left Ventricle	heart
46	chr9:13607800-13608000	Enhancers	Right Ventricle	heart
47	chr9:13607800-13608000	Enhancers	NH-A	brain
48	chr9:13607800-13608200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr9:13607800-13608200	Enhancers	Fetal Thymus	thymus
50	chr9:13607800-13608200	Enhancers	Psoas Muscle	Psoas

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