Variant report

Variant	rs60966860
Chromosome Location	chr14:77806558-77806559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77802566..77804115-chr14:77805934..77807499,2	K562	blood:
2	chr14:77806282..77808362-chr14:77841569..77843819,2	MCF-7	breast:
3	chr14:77801139..77804066-chr14:77804282..77807434,3	K562	blood:

Variant related genes	Relation type
ENSG00000100583	Chromatin interaction
ENSG00000100580	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56686781	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7141816	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7142535	0.83[AFR][1000 genomes]
rs7142643	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7144883	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7145918	0.83[AFR][1000 genomes]
rs7148278	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77789000-77807600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:77789200-77806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:77789200-77807000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:77791600-77807400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
7	chr14:77794400-77807800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:77796800-77807600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:77797000-77807800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:77799400-77808800	Weak transcription	K562	blood
11	chr14:77801200-77810400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:77801200-77812600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:77801400-77810200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr14:77801400-77811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:77801600-77810600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:77802000-77807000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:77802000-77813000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr14:77802200-77806600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr14:77802200-77807600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:77802800-77810600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:77803000-77811000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:77803000-77811000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:77803200-77807800	Weak transcription	HSMMtube	muscle
24	chr14:77803200-77809000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:77803200-77810400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:77803600-77813000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:77804000-77807000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr14:77804000-77808800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr14:77804200-77808000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:77804200-77809400	Weak transcription	Hela-S3	cervix
32	chr14:77804200-77811400	Strong transcription	Primary B cells from cord blood	blood
33	chr14:77804400-77809600	Strong transcription	Brain Anterior Caudate	brain
34	chr14:77804400-77811400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr14:77804600-77807400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr14:77804600-77807600	Weak transcription	Right Ventricle	heart
37	chr14:77804600-77810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:77804600-77811000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:77804800-77806600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:77804800-77807200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr14:77804800-77810200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:77804800-77811400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:77805000-77807600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr14:77805000-77809200	Weak transcription	Fetal Brain Male	brain
45	chr14:77805200-77806600	Enhancers	NHDF-Ad	bronchial
46	chr14:77805200-77807200	Enhancers	H9 Cell Line	embryonic stem cell
47	chr14:77805200-77807200	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr14:77805200-77810000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:77805200-77813000	Strong transcription	Fetal Intestine Large	intestine
50	chr14:77805200-77818600	Weak transcription	Small Intestine	intestine

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