Variant report

Variant	rs60976771
Chromosome Location	chr5:16624085-16624086
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6864209	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16617800-16625800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:16618600-16626200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:16618600-16627000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:16619800-16625000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:16619800-16625200	Weak transcription	Thymus	Thymus
6	chr5:16620200-16625200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:16620400-16625200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:16621000-16625200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:16622600-16626200	Weak transcription	Left Ventricle	heart
10	chr5:16623000-16624400	Weak transcription	Fetal Heart	heart
11	chr5:16623200-16630600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:16623800-16624200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:16623800-16624200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr5:16623800-16624600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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