Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516879	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727543	0.92[AFR][1000 genomes]
rs17017638	0.93[AFR][1000 genomes]
rs17017644	0.93[AFR][1000 genomes]
rs17017647	0.93[AFR][1000 genomes]
rs17017652	0.92[AFR][1000 genomes]
rs17017655	0.92[AFR][1000 genomes]
rs17017663	0.92[AFR][1000 genomes]
rs17017669	0.92[AFR][1000 genomes]
rs17017673	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17017681	0.92[AFR][1000 genomes]
rs17017683	0.90[AFR][1000 genomes]
rs17017686	0.92[AFR][1000 genomes]
rs17017687	0.92[AFR][1000 genomes]
rs17187511	0.93[AFR][1000 genomes]
rs1823881	0.92[AFR][1000 genomes]
rs1823882	0.92[AFR][1000 genomes]
rs62309551	0.95[AFR][1000 genomes]
rs62309552	0.95[AFR][1000 genomes]
rs62309553	0.95[AFR][1000 genomes]
rs62309555	0.92[AFR][1000 genomes]
rs62309556	0.92[AFR][1000 genomes]
rs62309558	0.91[AFR][1000 genomes]
rs6838797	0.90[AFR][1000 genomes]
rs724580	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91734800-91736400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:91735000-91735600	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr4:91735000-91736200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr4:91735000-91736600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr4:91735200-91735600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:91735200-91735600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:91735200-91736000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr4:91735200-91737000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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