Variant report

Variant	rs6098001
Chromosome Location	chr20:53084721-53084722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53083713..53086465-chr20:53104546..53106950,2	MCF-7	breast:
2	chr20:52834058..52838026-chr20:53082960..53086578,4	MCF-7	breast:
3	chr19:39323028..39324723-chr20:53082309..53085056,2	MCF-7	breast:
4	chr20:53084412..53085133-chr20:53323833..53324690,2	MCF-7	breast:
5	chr20:53082117..53084840-chr20:53092758..53094817,2	MCF-7	breast:
6	chr20:53052477..53056021-chr20:53080594..53084752,4	MCF-7	breast:
7	chr20:52209472..52211253-chr20:53083989..53086428,2	MCF-7	breast:
8	chr20:53082885..53085495-chr20:53250896..53253910,3	MCF-7	breast:
9	chr20:53082818..53085398-chr20:53109115..53112066,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59828650	1.00[AMR][1000 genomes]
rs6023268	1.00[AMR][1000 genomes]
rs6091883	1.00[AMR][1000 genomes]
rs6098004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53084000-53085200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr20:53084600-53084800	Enhancers	Aorta	Aorta
3	chr20:53084600-53085000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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