Variant report

Variant	rs60980392
Chromosome Location	chr7:78721598-78721599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10232931	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10247631	1.00[AMR][1000 genomes]
rs10251142	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10251771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267082	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13437630	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55658891	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959070	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73703624	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831040	chr7:78623195-78831998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78720000-78722200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:78720200-78722000	Enhancers	Osteobl	bone
3	chr7:78720400-78722400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:78720400-78725400	Weak transcription	NHLF	lung
5	chr7:78720600-78725000	Weak transcription	HUVEC	blood vessel
6	chr7:78720600-78725200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:78720800-78725400	Weak transcription	NH-A	brain
8	chr7:78721000-78725400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:78721400-78725200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:78721400-78725400	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links