Variant report

Variant	rs6098110
Chromosome Location	chr20:53226399-53226400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6091932	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6091933	1.00[YRI][hapmap]
rs6098106	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6098109	1.00[AFR][1000 genomes]
rs6098112	1.00[AFR][1000 genomes]
rs6098113	1.00[AFR][1000 genomes]
rs6098115	1.00[AFR][1000 genomes]
rs6098121	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv586282	chr20:53218978-53254815	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53202200-53230800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:53204600-53240600	Weak transcription	Left Ventricle	heart
3	chr20:53206400-53226600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:53215200-53236400	Weak transcription	Aorta	Aorta
5	chr20:53216400-53227000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:53216800-53226800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr20:53217000-53235800	Weak transcription	Brain Germinal Matrix	brain
8	chr20:53217400-53240600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:53217800-53227000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr20:53217800-53227400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr20:53221600-53239000	Weak transcription	Osteobl	bone
12	chr20:53223400-53227600	Weak transcription	Fetal Muscle Leg	muscle
13	chr20:53225400-53227600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr20:53225600-53227200	Weak transcription	Ovary	ovary
15	chr20:53225800-53226800	Enhancers	Fetal Brain Female	brain
16	chr20:53226000-53228400	Weak transcription	Adipose Nuclei	Adipose
17	chr20:53226200-53227600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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