Variant report

Variant	rs6098353
Chromosome Location	chr20:53597031-53597032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56654893	1.00[AMR][1000 genomes]
rs59652449	1.00[AMR][1000 genomes]
rs6092008	1.00[AMR][1000 genomes]
rs6092014	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6092015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6092016	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6092019	1.00[AMR][1000 genomes]
rs6098335	1.00[AMR][1000 genomes]
rs6098338	1.00[AMR][1000 genomes]
rs6098347	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098348	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098350	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6098352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7274987	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	esv1814522	chr20:53592333-53604668	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53596600-53597400	Enhancers	Adipose Nuclei	Adipose
2	chr20:53596800-53597600	Enhancers	Fetal Kidney	kidney
3	chr20:53597000-53598800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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