Variant report

Variant	rs60996062
Chromosome Location	chr13:52175894-52175895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52174013..52176173-chr13:52177429..52180308,2	K562	blood:
2	chr13:52175746..52177889-chr13:52189693..52191725,2	K562	blood:
3	chr13:52156993..52158950-chr13:52173357..52176105,2	K562	blood:
4	chr13:52175306..52178787-chr13:52179968..52182908,3	K562	blood:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

rs_ID	r²[population]
rs58078212	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58723167	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60108223	0.84[EUR][1000 genomes]
rs60591998	0.84[EUR][1000 genomes]
rs6650382	0.86[EUR][1000 genomes]
rs7332922	0.90[EUR][1000 genomes]

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
2	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
3	chr13:52162800-52180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:52163200-52182600	Weak transcription	Ovary	ovary
5	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
6	chr13:52165800-52179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:52166000-52176400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr13:52166000-52181200	Weak transcription	NH-A	brain
9	chr13:52166200-52178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:52166200-52181200	Weak transcription	NHLF	lung
11	chr13:52166400-52176200	Weak transcription	Osteobl	bone
12	chr13:52166400-52181200	Weak transcription	Hela-S3	cervix
13	chr13:52167600-52179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:52168400-52177400	Weak transcription	Lung	lung
15	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:52168600-52177600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr13:52169800-52176000	Weak transcription	Primary T cells from cord blood	blood
18	chr13:52169800-52179600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:52169800-52187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:52169800-52188600	Weak transcription	Esophagus	oesophagus
21	chr13:52169800-52188600	Weak transcription	Gastric	stomach
22	chr13:52171000-52176800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr13:52171000-52180000	Weak transcription	Psoas Muscle	Psoas
24	chr13:52171200-52176200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:52171200-52176200	Weak transcription	A549	lung
26	chr13:52171400-52177400	Weak transcription	HMEC	breast
27	chr13:52171800-52177000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr13:52171800-52179000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:52173200-52176800	Enhancers	Primary hematopoietic stem cells	blood
30	chr13:52173200-52177200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr13:52173400-52176600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr13:52173400-52177000	Enhancers	Primary B cells from cord blood	blood
33	chr13:52173400-52177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:52173400-52177200	Enhancers	Primary B cells from peripheral blood	blood
35	chr13:52173600-52190400	Weak transcription	Fetal Heart	heart
36	chr13:52174000-52176000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr13:52174000-52176200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr13:52174000-52179800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr13:52174200-52177200	Strong transcription	NHEK	skin
40	chr13:52174200-52183000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr13:52174200-52188200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:52174400-52176200	Weak transcription	NHDF-Ad	bronchial
43	chr13:52174400-52176800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr13:52174400-52188400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr13:52174600-52176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:52174600-52179800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr13:52174600-52179800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:52174600-52183000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr13:52174800-52176800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr13:52174800-52179200	Weak transcription	Brain Angular Gyrus	brain

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