Variant report

Variant	rs60998603
Chromosome Location	chr6:73896939-73896940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12660923	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12661261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662303	0.88[EUR][1000 genomes]
rs12662357	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12662682	0.88[EUR][1000 genomes]
rs12662788	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662803	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662818	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12662845	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12664116	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883459	0.88[EUR][1000 genomes]
rs16883468	0.80[EUR][1000 genomes]
rs16883471	0.80[EUR][1000 genomes]
rs16883483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16883489	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34320997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35791353	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3799279	0.88[EUR][1000 genomes]
rs3799281	0.88[EUR][1000 genomes]
rs3799282	0.88[EUR][1000 genomes]
rs3799283	0.88[EUR][1000 genomes]
rs3799284	0.88[EUR][1000 genomes]
rs3799285	0.84[EUR][1000 genomes]
rs3799287	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3823120	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41265511	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4631235	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56941368	0.80[EUR][1000 genomes]
rs57258907	0.93[ASN][1000 genomes]
rs57781909	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57919814	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58424716	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58519898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59789863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60111089	0.84[EUR][1000 genomes]
rs60710559	0.88[EUR][1000 genomes]
rs61240728	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73869000-73904200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73884800-73903600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73887600-73903600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73890800-73904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73890800-73904200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73890800-73904400	Weak transcription	Aorta	Aorta
7	chr6:73891000-73897400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:73891000-73900600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:73891000-73901000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73891000-73903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:73891000-73909600	Weak transcription	HSMMtube	muscle
12	chr6:73891200-73904400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:73892000-73904800	Weak transcription	GM12878-XiMat	blood
14	chr6:73893200-73904400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:73893400-73904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links