Variant report

Variant	rs61002538
Chromosome Location	chr3:17179951-17179952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56931091	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17150200-17182600	Weak transcription	Aorta	Aorta
2	chr3:17174200-17180600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:17177000-17180200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:17178000-17180200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:17178400-17181800	Weak transcription	Fetal Lung	lung
6	chr3:17178400-17183200	Weak transcription	Fetal Heart	heart
7	chr3:17178800-17180600	Weak transcription	Right Atrium	heart
8	chr3:17178800-17181000	Weak transcription	Left Ventricle	heart
9	chr3:17178800-17182800	Weak transcription	Right Ventricle	heart
10	chr3:17179400-17180600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:17179400-17193000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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