Variant report

Variant	rs61003658
Chromosome Location	chr1:59076546-59076547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72922105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548297	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59060600-59082200	Weak transcription	HUVEC	blood vessel
2	chr1:59071400-59077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:59072800-59082800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:59073400-59077800	Weak transcription	Aorta	Aorta
5	chr1:59074800-59077000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:59074800-59078800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59075000-59077600	Weak transcription	NHEK	skin
8	chr1:59075200-59078000	Weak transcription	Stomach Mucosa	stomach
9	chr1:59075200-59078400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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