Variant report

Variant	rs61009872
Chromosome Location	chr9:117652531-117652532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117652267..117654785-chr9:117659593..117661164,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12005693	0.92[AFR][1000 genomes]
rs59293522	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117647800-117655600	Weak transcription	NHDF-Ad	bronchial
2	chr9:117649200-117652800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr9:117649400-117653400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:117649400-117653400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:117650200-117652600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:117650200-117653000	Enhancers	Primary T cells from cord blood	blood
7	chr9:117650400-117652800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:117650400-117652800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:117650400-117653000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:117650400-117653000	Enhancers	Dnd41	blood
11	chr9:117650600-117652800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:117650600-117653600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:117650800-117652600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr9:117650800-117652800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr9:117650800-117652800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:117650800-117652800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr9:117650800-117652800	Enhancers	Fetal Thymus	thymus
18	chr9:117651000-117652600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:117651000-117652600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:117651000-117652600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:117651000-117652800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:117651000-117652800	Enhancers	Thymus	Thymus
23	chr9:117651000-117653000	Enhancers	Primary B cells from peripheral blood	blood
24	chr9:117651000-117653200	Enhancers	Primary B cells from cord blood	blood
25	chr9:117651200-117652600	Enhancers	Spleen	Spleen
26	chr9:117651200-117652800	Enhancers	Hela-S3	cervix
27	chr9:117651200-117656000	Weak transcription	Adipose Nuclei	Adipose
28	chr9:117651200-117656000	Weak transcription	HepG2	liver
29	chr9:117651400-117652600	Enhancers	Esophagus	oesophagus
30	chr9:117651400-117653000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:117651400-117655800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:117651400-117656200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:117651600-117652600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:117651600-117652600	Enhancers	Gastric	stomach
35	chr9:117651600-117652800	Enhancers	Primary hematopoietic stem cells	blood
36	chr9:117651600-117656600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr9:117651600-117656600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:117651600-117656800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:117651600-117657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:117651800-117652600	Enhancers	Lung	lung
41	chr9:117651800-117652800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:117651800-117652800	Enhancers	Stomach Mucosa	stomach
43	chr9:117651800-117652800	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr9:117651800-117656800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:117651800-117657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr9:117652000-117652600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:117652000-117652600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:117652000-117652600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:117652000-117652600	Enhancers	HSMM	muscle
50	chr9:117652000-117652600	Enhancers	NHEK	skin

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