Variant report

Variant	rs61010657
Chromosome Location	chr17:38670190-38670191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr17:38669367-38670943	HEK293-T-REx	kidney:	n/a	n/a
2	ZNF263	chr17:38669879-38671005	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:38640900..38643857-chr17:38669358..38670867,2	MCF-7	breast:
2	chr17:38669978..38672027-chr17:38691106..38694044,2	K562	blood:
3	chr17:38661296..38663245-chr17:38668253..38670398,2	MCF-7	breast:
4	chr17:38669573..38672204-chr17:38673213..38675996,3	K562	blood:

Variant related genes	Relation type
ENSG00000266088	TF binding region
ENSG00000266088	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34733633	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38665800-38670200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:38666000-38670200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:38666200-38670600	Enhancers	Placenta	Placenta
4	chr17:38666600-38670200	Enhancers	NHEK	skin
5	chr17:38666800-38670400	Weak transcription	Spleen	Spleen
6	chr17:38666800-38670600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:38666800-38671400	Weak transcription	Left Ventricle	heart
8	chr17:38666800-38674400	Weak transcription	Pancreas	Pancrea
9	chr17:38666800-38675000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr17:38666800-38677400	Weak transcription	Right Atrium	heart
11	chr17:38667000-38673000	Enhancers	A549	lung
12	chr17:38667400-38673000	Weak transcription	Esophagus	oesophagus
13	chr17:38668200-38671400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr17:38668200-38677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:38668400-38671400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:38668400-38680600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr17:38668600-38672800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:38668600-38675200	Weak transcription	Gastric	stomach
19	chr17:38668800-38671400	Weak transcription	Lung	lung
20	chr17:38668800-38672600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:38668800-38672600	Weak transcription	Osteobl	bone
22	chr17:38668800-38674600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr17:38669000-38670400	Enhancers	HepG2	liver
24	chr17:38669000-38670600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr17:38669000-38670800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr17:38669000-38671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:38669000-38671200	Weak transcription	HMEC	breast
28	chr17:38669000-38671400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr17:38669000-38671400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr17:38669000-38671600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr17:38669000-38672200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr17:38669000-38672800	Weak transcription	NHLF	lung
33	chr17:38669000-38673000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr17:38669400-38672800	Enhancers	Hela-S3	cervix
35	chr17:38669600-38670200	Enhancers	K562	blood
36	chr17:38669600-38670200	Bivalent Enhancer	NH-A	brain
37	chr17:38669600-38670800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr17:38669800-38670200	Enhancers	HSMMtube	muscle
39	chr17:38669800-38672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr17:38669800-38672800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr17:38670000-38671200	Weak transcription	Psoas Muscle	Psoas
42	chr17:38670000-38671400	Enhancers	Primary T cells from cord blood	blood
43	chr17:38670000-38671400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr17:38670000-38671600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr17:38670000-38671800	Enhancers	Primary T cells fromperipheralblood	blood
46	chr17:38670000-38672600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr17:38670000-38672800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:38670000-38672800	Enhancers	Primary B cells from peripheral blood	blood
49	chr17:38670000-38672800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr17:38670000-38672800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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