Variant report

Variant	rs61012118
Chromosome Location	chr1:186024012-186024013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186022716..186024915-chr1:186110976..186112669,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57311690	1.00[AFR][1000 genomes]
rs74134298	1.00[AMR][1000 genomes]
rs74136003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136007	1.00[AFR][1000 genomes]
rs74136049	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186007400-186048000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:186012000-186048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:186013000-186026600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
6	chr1:186016200-186041800	Weak transcription	Aorta	Aorta
7	chr1:186016400-186038600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:186020000-186024600	Weak transcription	NHDF-Ad	bronchial
9	chr1:186020000-186028000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:186020000-186028200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:186020000-186062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:186020200-186024800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:186021400-186024600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:186023200-186024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:186023200-186025400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:186023400-186024400	Weak transcription	Adipose Nuclei	Adipose
17	chr1:186023400-186028000	Weak transcription	Fetal Lung	lung
18	chr1:186023600-186028400	Weak transcription	K562	blood
19	chr1:186023800-186024800	ZNF genes & repeats	Left Ventricle	heart
20	chr1:186023800-186026400	Weak transcription	Liver	Liver

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