Variant report

Variant	rs610173
Chromosome Location	chr9:136843307-136843308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136841663..136844202-chr9:136856477..136858166,2	K562	blood:
2	chr9:136840615..136846826-chr9:136854892..136859021,10	MCF-7	breast:
3	chr9:136836160..136840287-chr9:136840459..136843890,5	MCF-7	breast:
4	chr9:136739328..136742123-chr9:136841796..136845434,3	MCF-7	breast:
5	chr9:136834881..136836986-chr9:136842097..136843877,2	MCF-7	breast:
6	chr9:136839997..136844319-chr9:136851053..136854251,5	MCF-7	breast:
7	chr9:136840954..136843930-chr9:136846251..136850265,3	K562	blood:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs370641	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs370869	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs375871	0.91[ASN][1000 genomes]
rs379485	0.95[ASN][1000 genomes]
rs379996	0.83[ASN][1000 genomes]
rs414848	0.95[ASN][1000 genomes]
rs416060	0.94[ASN][1000 genomes]
rs419240	0.95[ASN][1000 genomes]
rs421510	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs421771	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs422999	0.88[ASN][1000 genomes]
rs425850	0.95[ASN][1000 genomes]
rs435586	0.95[ASN][1000 genomes]
rs435943	0.95[ASN][1000 genomes]
rs453703	0.91[ASN][1000 genomes]
rs611072	0.95[ASN][1000 genomes]
rs625083	0.91[ASN][1000 genomes]
rs625958	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv615743	chr9:136835343-136874158	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv894133	chr9:136839840-136887757	Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv894134	chr9:136839840-136892523	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv894135	chr9:136839840-136927657	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
16	nsv894136	chr9:136839840-136938961	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv894137	chr9:136839840-136950691	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
18	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
19	esv1819984	chr9:136842109-136858528	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	esv1822910	chr9:136842109-136858528	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
21	esv1824837	chr9:136842109-136858528	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136832600-136843800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:136832800-136844200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:136835200-136848600	Enhancers	Fetal Intestine Large	intestine
4	chr9:136835400-136848800	Genic enhancers	Fetal Intestine Small	intestine
5	chr9:136835800-136854800	Weak transcription	A549	lung
6	chr9:136836800-136843800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:136836800-136844000	Weak transcription	NHDF-Ad	bronchial
8	chr9:136837400-136851400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:136837400-136854800	Weak transcription	HMEC	breast
10	chr9:136837600-136845000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:136837600-136845000	Weak transcription	Fetal Kidney	kidney
12	chr9:136837800-136844000	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:136837800-136850600	Weak transcription	NHEK	skin
14	chr9:136838000-136854800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:136839000-136844000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:136839000-136844000	Weak transcription	Esophagus	oesophagus
17	chr9:136839000-136844400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:136839000-136844400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:136839200-136843400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:136839200-136843800	Weak transcription	Small Intestine	intestine
21	chr9:136839600-136844000	Weak transcription	Left Ventricle	heart
22	chr9:136839600-136844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:136839600-136844200	Weak transcription	Brain Anterior Caudate	brain
24	chr9:136839600-136844800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:136839800-136844000	Weak transcription	Adipose Nuclei	Adipose
26	chr9:136839800-136844000	Weak transcription	Gastric	stomach
27	chr9:136839800-136844200	Weak transcription	Fetal Brain Female	brain
28	chr9:136839800-136844200	Weak transcription	HUVEC	blood vessel
29	chr9:136840000-136854800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:136840200-136843600	Weak transcription	Right Ventricle	heart
31	chr9:136840200-136844000	Weak transcription	Right Atrium	heart
32	chr9:136840200-136844600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:136840200-136845000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:136840400-136843800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:136840400-136843800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:136840400-136854800	Weak transcription	Hela-S3	cervix
37	chr9:136840800-136844200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:136840800-136852600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:136841400-136843400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:136841400-136844000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:136841600-136843400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:136841600-136843400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr9:136841600-136846000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr9:136841800-136843800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:136841800-136844600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:136842000-136844400	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:136842000-136844400	Weak transcription	GM12878-XiMat	blood
48	chr9:136842000-136847800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:136842000-136848800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:136842200-136843800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links