Variant report

Variant	rs6102725
Chromosome Location	chr20:40829026-40829027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10153998	1.00[AFR][1000 genomes]
rs35010609	1.00[AMR][1000 genomes]
rs6030125	1.00[AMR][1000 genomes]
rs6093582	1.00[AMR][1000 genomes]
rs6093590	1.00[AFR][1000 genomes]
rs6093599	1.00[AMR][1000 genomes]
rs6093602	1.00[AMR][1000 genomes]
rs6102700	1.00[AMR][1000 genomes]
rs6102705	1.00[AMR][1000 genomes]
rs6102716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6102726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6130046	1.00[AMR][1000 genomes]
rs7269575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40828000-40850400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40828600-40833000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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