Variant report

Variant	rs61033913
Chromosome Location	chr2:173067860-173067861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173061279..173063058-chr2:173066457..173068997,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10179896	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10187668	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10188182	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10191165	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10198906	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10210968	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10211286	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1038565	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1038566	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1038567	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10497380	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12467851	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12468728	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12472179	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12472208	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12475912	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12692986	0.85[EUR][1000 genomes]
rs12692991	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12692992	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12692994	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12692995	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12692996	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12998734	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12999168	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13009470	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13019943	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13393795	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13393977	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13407236	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1486956	0.81[AMR][1000 genomes]
rs1531998	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1906182	0.81[AMR][1000 genomes]
rs1906183	0.80[AMR][1000 genomes]
rs2129476	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2129477	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2129478	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2357315	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs33999155	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34366279	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34961322	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35482192	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4306685	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4335914	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4347787	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4353612	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4359606	0.85[AMR][1000 genomes]
rs4539764	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4621143	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60758744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6433334	0.81[AMR][1000 genomes]
rs6433335	0.81[AMR][1000 genomes]
rs6705994	0.81[AMR][1000 genomes]
rs6706443	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6711418	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6711450	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6720175	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6720217	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6720539	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6721163	0.81[AMR][1000 genomes]
rs6723670	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6730323	0.81[AMR][1000 genomes]
rs6730339	0.81[AMR][1000 genomes]
rs6735491	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6735511	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6735783	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6736020	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6736027	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6739670	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6739805	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6750823	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7592807	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9287949	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9287950	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9287951	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9677800	0.84[EUR][1000 genomes]
rs9752175	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9752190	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9752202	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv3033	chr2:173063284-173108586	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173065200-173069000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:173065200-173069000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr2:173065400-173069000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:173065400-173072600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:173065400-173073600	Weak transcription	NHEK	skin

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