Variant report

Variant	rs61036023
Chromosome Location	chr2:31234765-31234766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57411770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57784884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59961542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753235	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31232600-31235400	Weak transcription	Fetal Lung	lung
2	chr2:31232600-31251000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:31232800-31235200	Weak transcription	Fetal Kidney	kidney
4	chr2:31233400-31235200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr2:31233800-31235400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:31234400-31234800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr2:31234400-31235200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:31234400-31236000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:31234400-31236000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:31234400-31236400	Enhancers	NHEK	skin
11	chr2:31234600-31234800	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr2:31234600-31235000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:31234600-31235600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:31234600-31236000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:31234600-31236400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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