Variant report

Variant	rs61037123
Chromosome Location	chr2:49114458-49114459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:49108913..49110824-chr2:49114186..49115949,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12986921	0.95[EUR][1000 genomes]
rs12988380	0.95[EUR][1000 genomes]
rs12988554	0.95[EUR][1000 genomes]
rs12991639	0.95[EUR][1000 genomes]
rs12991812	0.95[EUR][1000 genomes]
rs12993350	0.95[EUR][1000 genomes]
rs12998973	0.95[EUR][1000 genomes]
rs12999088	0.95[EUR][1000 genomes]
rs13000493	0.95[EUR][1000 genomes]
rs13003416	0.95[EUR][1000 genomes]
rs13006849	0.95[EUR][1000 genomes]
rs13012154	0.96[EUR][1000 genomes]
rs13013520	0.95[EUR][1000 genomes]
rs13026368	0.95[EUR][1000 genomes]
rs13026374	0.95[EUR][1000 genomes]
rs13033968	0.95[EUR][1000 genomes]
rs17555938	0.96[EUR][1000 genomes]
rs17556008	0.96[EUR][1000 genomes]
rs28407648	0.80[EUR][1000 genomes]
rs34096435	0.95[EUR][1000 genomes]
rs34139125	0.95[EUR][1000 genomes]
rs34177801	0.96[EUR][1000 genomes]
rs34246643	0.95[EUR][1000 genomes]
rs34316068	0.95[EUR][1000 genomes]
rs34493890	0.95[EUR][1000 genomes]
rs34519361	0.95[EUR][1000 genomes]
rs34583302	0.95[EUR][1000 genomes]
rs34679037	0.96[EUR][1000 genomes]
rs34747271	0.95[EUR][1000 genomes]
rs34790546	0.96[EUR][1000 genomes]
rs34851917	0.95[EUR][1000 genomes]
rs34912705	0.95[EUR][1000 genomes]
rs35093053	0.95[EUR][1000 genomes]
rs35323371	0.96[EUR][1000 genomes]
rs35625756	0.95[EUR][1000 genomes]
rs35775057	0.95[EUR][1000 genomes]
rs35935449	0.95[EUR][1000 genomes]
rs35975792	0.95[EUR][1000 genomes]
rs35988365	0.95[EUR][1000 genomes]
rs36028906	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36139546	0.80[EUR][1000 genomes]
rs59605770	0.95[EUR][1000 genomes]
rs66479668	0.96[EUR][1000 genomes]
rs66523169	0.80[EUR][1000 genomes]
rs66524960	0.95[EUR][1000 genomes]
rs66593338	0.95[EUR][1000 genomes]
rs66709862	0.95[EUR][1000 genomes]
rs66713554	0.95[EUR][1000 genomes]
rs66898134	0.95[EUR][1000 genomes]
rs67198598	0.95[EUR][1000 genomes]
rs67386139	0.95[EUR][1000 genomes]
rs67412822	0.95[EUR][1000 genomes]
rs67476091	0.95[EUR][1000 genomes]
rs71407521	0.95[EUR][1000 genomes]
rs71407527	0.95[EUR][1000 genomes]
rs71407528	0.95[EUR][1000 genomes]
rs71407529	0.95[EUR][1000 genomes]
rs71407530	0.95[EUR][1000 genomes]
rs71407531	0.96[EUR][1000 genomes]
rs72811839	0.95[EUR][1000 genomes]
rs72811841	0.95[EUR][1000 genomes]
rs72811843	0.95[EUR][1000 genomes]
rs72811844	0.95[EUR][1000 genomes]
rs72811874	0.95[EUR][1000 genomes]
rs72811886	0.95[EUR][1000 genomes]
rs72823291	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv998864	chr2:49015878-49230000	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv874005	chr2:49086399-49142199	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1013414	chr2:49090394-49191927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1012090	chr2:49090394-49192704	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv874006	chr2:49092782-49141414	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1006364	chr2:49096139-49147372	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv874007	chr2:49102526-49321164	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	nsv581789	chr2:49109306-49150192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:49107200-49115400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:49112400-49115000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:49114000-49116200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:49114200-49116000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:49114200-49116200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:49114400-49115000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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