Variant report

Variant	rs61039202
Chromosome Location	chr11:77259036-77259037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77256317..77259105-chr11:77324421..77327303,2	MCF-7	breast:
2	chr11:76906559..76907619-chr11:77259021..77259968,8	MCF-7	breast:
3	chr11:77184497..77185454-chr11:77259006..77259559,2	MCF-7	breast:
4	chr11:76902791..76903778-chr11:77258737..77260363,14	MCF-7	breast:
5	chr11:76906503..76907469-chr11:77258976..77259541,2	K562	blood:

Variant related genes	Relation type
ENSG00000149269	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57560605	1.00[AMR][1000 genomes]
rs58827658	1.00[AMR][1000 genomes]
rs59171958	1.00[AMR][1000 genomes]
rs60679904	1.00[AMR][1000 genomes]
rs73498898	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77253800-77259200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:77253800-77259200	Weak transcription	HSMMtube	muscle
3	chr11:77253800-77259200	Weak transcription	Osteobl	bone
4	chr11:77254000-77259200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:77254400-77259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:77258400-77260000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:77258400-77260000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:77258600-77259200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:77258600-77259200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:77258600-77260000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:77258600-77260600	Enhancers	Fetal Intestine Small	intestine
12	chr11:77258800-77259400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:77258800-77259800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:77258800-77260000	Enhancers	Stomach Mucosa	stomach
15	chr11:77259000-77259200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr11:77259000-77259200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:77259000-77259200	Enhancers	Brain Anterior Caudate	brain
18	chr11:77259000-77259200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:77259000-77259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:77259000-77259600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr11:77259000-77259800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:77259000-77259800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr11:77259000-77259800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:77259000-77259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:77259000-77259800	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:77259000-77259800	Enhancers	Brain Substantia Nigra	brain
27	chr11:77259000-77259800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr11:77259000-77259800	Enhancers	GM12878-XiMat	blood
29	chr11:77259000-77260000	Enhancers	Brain Hippocampus Middle	brain
30	chr11:77259000-77260000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:77259000-77260000	Enhancers	Duodenum Mucosa	Duodenum
32	chr11:77259000-77260000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:77259000-77260200	Enhancers	Fetal Intestine Large	intestine
34	chr11:77259000-77260400	Enhancers	Brain Angular Gyrus	brain
35	chr11:77259000-77260800	Enhancers	Placenta	Placenta
36	chr11:77259000-77270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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