Variant report

Variant	rs61040384
Chromosome Location	chr2:182059894-182059895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16867397	1.00[EUR][1000 genomes]
rs265255	1.00[EUR][1000 genomes]
rs265257	1.00[EUR][1000 genomes]
rs6433884	1.00[EUR][1000 genomes]
rs73027486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182045400-182062000	Weak transcription	Dnd41	blood
2	chr2:182050800-182063400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:182054800-182061400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:182055800-182060400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:182056000-182060200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:182056000-182061000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:182056600-182061000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:182056600-182068000	Weak transcription	HSMMtube	muscle
9	chr2:182056800-182061000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:182058000-182060000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:182058000-182060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr2:182059600-182062400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr2:182059800-182064400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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