Variant report
| Variant | rs61046222 |
|---|---|
| Chromosome Location | chr14:22143922-22143923 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr14:22143804-22144159 | IMR90 | lung: | n/a | chr14:22143970-22143985 |
| 2 | MAFK | chr14:22143812-22144149 | HepG2 | liver: | n/a | chr14:22143970-22143985 |
| 3 | MAFF | chr14:22143803-22144164 | HepG2 | liver: | n/a | chr14:22143968-22143986 |
| 4 | MAFK | chr14:22143797-22144166 | HepG2 | liver: | n/a | chr14:22143970-22143985 |
| 5 | MAFK | chr14:22143825-22144139 | K562 | blood: | n/a | chr14:22143970-22143985 |
| 6 | MAFF | chr14:22143813-22144131 | K562 | blood: | n/a | chr14:22143968-22143986 |
| 7 | MAFK | chr14:22143838-22144155 | H1-hESC | embryonic stem cell: | n/a | chr14:22143970-22143985 |
| 8 | BACH1 | chr14:22143914-22143985 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | MAFK | chr14:22143893-22144113 | Hela-S3 | cervix: | n/a | chr14:22143970-22143985 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR4E1 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12895953 | 0.84[ASN][1000 genomes] |
| rs4982479 | 0.85[AMR][1000 genomes] |
| rs4982480 | 0.85[AMR][1000 genomes] |
| rs4982481 | 0.85[AMR][1000 genomes] |
| rs55750218 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs55998495 | 0.85[AMR][1000 genomes] |
| rs56256435 | 0.85[AMR][1000 genomes] |
| rs61974099 | 0.85[AMR][1000 genomes] |
| rs61974101 | 0.84[AMR][1000 genomes] |
| rs61974106 | 0.84[AMR][1000 genomes] |
| rs61974770 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72688009 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422459 | chr14:21931624-22169502 | Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv1042309 | chr14:22042511-22866936 | Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 90 gene(s) | inside rSNPs | diseases |
| 3 | nsv456147 | chr14:22073473-22305071 | Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv563851 | chr14:22073473-22305071 | Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 5 | nsv901479 | chr14:22102800-22146832 | Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv510629 | chr14:22134425-22215842 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
