Variant report

Variant	rs6105484
Chromosome Location	chr20:15871578-15871579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12624950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6110811	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6110812	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15868400-15872000	Enhancers	HSMMtube	muscle
2	chr20:15869000-15871600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr20:15869000-15872000	Enhancers	Fetal Muscle Leg	muscle
4	chr20:15869200-15872000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr20:15869400-15872000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:15870000-15872200	Enhancers	Primary B cells from peripheral blood	blood
7	chr20:15870400-15871800	Enhancers	HSMM	muscle
8	chr20:15870600-15871800	Weak transcription	Aorta	Aorta
9	chr20:15870800-15874800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr20:15870800-15876200	Weak transcription	GM12878-XiMat	blood
11	chr20:15871200-15871600	Enhancers	Primary B cells from cord blood	blood
12	chr20:15871200-15874600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:15871400-15871800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr20:15871400-15874600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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