Variant report

Variant	rs6105494
Chromosome Location	chr20:15912037-15912038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1012300	0.81[AMR][1000 genomes]
rs2236008	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6043612	0.87[EUR][1000 genomes]
rs6043626	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6074967	0.81[EUR][1000 genomes]
rs6080026	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6080027	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6110827	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15904800-15916200	Weak transcription	GM12878-XiMat	blood
3	chr20:15910800-15912200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:15910800-15912200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:15910800-15912200	Enhancers	Hela-S3	cervix
6	chr20:15911000-15912200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:15911000-15912200	Enhancers	Primary B cells from peripheral blood	blood
8	chr20:15911200-15912200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:15911200-15912200	Enhancers	Adipose Nuclei	Adipose
10	chr20:15911200-15912200	Enhancers	Fetal Intestine Small	intestine
11	chr20:15911200-15912400	Enhancers	HMEC	breast
12	chr20:15911400-15912200	Enhancers	Fetal Intestine Large	intestine
13	chr20:15911400-15912600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:15911600-15915000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr20:15911800-15912800	Weak transcription	Primary B cells from cord blood	blood
16	chr20:15912000-15912200	Enhancers	Spleen	Spleen
17	chr20:15912000-15915000	Weak transcription	Fetal Brain Male	brain
18	chr20:15912000-15930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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