The 2.0 version of rSNPBase

Variant report

Variant rs6105577
Chromosome Location chr20:16315486-16315487
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16262600-16346200 Weak transcription Gastric stomach
2 chr20:16276400-16348200 Weak transcription Colon Smooth Muscle Colon
3 chr20:16285400-16330000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr20:16288000-16332400 Weak transcription Brain Cingulate Gyrus brain
5 chr20:16288400-16318200 Weak transcription Pancreas Pancrea
6 chr20:16288800-16318600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:16289400-16348000 Weak transcription Colonic Mucosa Colon
8 chr20:16289800-16323200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr20:16291200-16317800 Weak transcription Esophagus oesophagus
10 chr20:16291400-16331000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr20:16294000-16318200 Weak transcription Fetal Stomach stomach
12 chr20:16295600-16318600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr20:16295600-16349000 Weak transcription HepG2 liver
14 chr20:16296600-16345200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr20:16296800-16318200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr20:16298800-16333400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr20:16301200-16317400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr20:16302800-16330600 Weak transcription Brain Substantia Nigra brain
19 chr20:16306600-16328400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr20:16307000-16316600 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr20:16308400-16329400 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr20:16309000-16319400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr20:16309200-16316800 Weak transcription Fetal Heart heart
24 chr20:16309800-16326600 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr20:16311200-16315600 Strong transcription Primary T cells from cord blood blood
26 chr20:16311600-16316000 Weak transcription Fetal Kidney kidney
27 chr20:16311800-16329000 Weak transcription Psoas Muscle Psoas
28 chr20:16312400-16331200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr20:16312800-16316200 Strong transcription Left Ventricle heart
30 chr20:16313400-16315600 Strong transcription Ovary ovary
31 chr20:16313600-16315600 ZNF genes & repeats Primary B cells from cord blood blood
32 chr20:16313600-16316000 ZNF genes & repeats Primary hematopoietic stem cells blood
33 chr20:16313600-16316200 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr20:16313600-16316200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr20:16313800-16315600 ZNF genes & repeats Fetal Muscle Trunk muscle
36 chr20:16313800-16316000 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
37 chr20:16314000-16316000 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
38 chr20:16314000-16316200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr20:16314000-16329600 Weak transcription Lung lung
40 chr20:16314200-16316600 Weak transcription Primary monocytes fromperipheralblood blood
41 chr20:16314400-16315600 ZNF genes & repeats Primary B cells from peripheral blood blood
42 chr20:16314400-16317600 Strong transcription Adipose Nuclei Adipose
43 chr20:16314600-16316600 Strong transcription Primary T helper cells PMA-I stimulated --
44 chr20:16314600-16319400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr20:16314600-16328800 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr20:16314800-16315600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr20:16314800-16316200 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
48 chr20:16315000-16315600 ZNF genes & repeats Primary Natural Killer cells fromperipheralblood blood
49 chr20:16315000-16315600 ZNF genes & repeats Aorta Aorta
50 chr20:16315000-16322200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015