Variant report

Variant	rs61056107
Chromosome Location	chr1:97586876-97586877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:97583499..97585918-chr1:97586058..97587654,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6680642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv530048	chr1:97457175-98031501	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007950	chr1:97466488-98021146	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830692	chr1:97501492-97625153	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97538000-97603600	Weak transcription	Psoas Muscle	Psoas
2	chr1:97560800-97603600	Weak transcription	Pancreas	Pancrea
3	chr1:97563600-97594000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:97563600-97619200	Weak transcription	Dnd41	blood
5	chr1:97564200-97632800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:97565400-97603600	Weak transcription	Left Ventricle	heart
7	chr1:97566000-97599400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:97570400-97588400	Weak transcription	Aorta	Aorta
9	chr1:97570600-97603800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:97571200-97604000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:97572400-97587200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:97577600-97587800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:97578400-97587000	Weak transcription	Primary T cells from cord blood	blood
14	chr1:97579000-97596800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:97580800-97595400	Weak transcription	Liver	Liver
16	chr1:97580800-97604400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr1:97583000-97596800	Weak transcription	Adipose Nuclei	Adipose
18	chr1:97583200-97589600	Weak transcription	HSMM	muscle
19	chr1:97584800-97587600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr1:97585600-97621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:97586000-97596600	Weak transcription	Brain Angular Gyrus	brain
22	chr1:97586400-97589200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:97586600-97587000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr1:97586800-97589000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links