Variant report

Variant	rs61058076
Chromosome Location	chr13:52609278-52609279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52600061..52602835-chr13:52607989..52610209,4	K562	blood:
2	chr13:52603093..52604723-chr13:52608557..52611141,2	K562	blood:
3	chr13:52598398..52600067-chr13:52607293..52609530,2	K562	blood:

Variant related genes	Relation type
ENSG00000253797	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56369842	0.85[AFR][1000 genomes]
rs60776114	1.00[AMR][1000 genomes]
rs74087020	0.81[AFR][1000 genomes]
rs74087023	0.81[AFR][1000 genomes]
rs74087040	1.00[AMR][1000 genomes]
rs74087051	1.00[AMR][1000 genomes]
rs74087055	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv900082	chr13:52555288-52709938	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52588000-52617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:52595000-52611200	Weak transcription	Psoas Muscle	Psoas
3	chr13:52596600-52614000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:52599000-52611000	Weak transcription	Fetal Brain Male	brain
5	chr13:52600000-52609800	Weak transcription	Stomach Mucosa	stomach
6	chr13:52600200-52613800	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:52600200-52613800	Weak transcription	Small Intestine	intestine
8	chr13:52600400-52627600	Weak transcription	HSMMtube	muscle
9	chr13:52600800-52609600	Weak transcription	Esophagus	oesophagus
10	chr13:52600800-52611400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:52601000-52619400	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:52601200-52609400	Weak transcription	HMEC	breast
13	chr13:52601200-52610000	Weak transcription	Primary B cells from cord blood	blood
14	chr13:52601600-52609600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr13:52603200-52613400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr13:52603600-52610000	Weak transcription	Fetal Kidney	kidney
17	chr13:52603600-52610200	Weak transcription	Left Ventricle	heart
18	chr13:52603800-52609600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr13:52603800-52610200	Weak transcription	Gastric	stomach
20	chr13:52604000-52612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:52604000-52615200	Weak transcription	Fetal Intestine Large	intestine
22	chr13:52604200-52610200	Weak transcription	K562	blood
23	chr13:52604200-52610800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:52604200-52611600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:52604200-52613400	Weak transcription	Right Ventricle	heart
26	chr13:52604400-52609600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr13:52604400-52610400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:52604400-52611000	Weak transcription	Primary T cells from cord blood	blood
29	chr13:52604400-52612000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:52605200-52609600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:52605400-52611800	Weak transcription	Fetal Thymus	thymus
32	chr13:52605800-52614400	Weak transcription	Thymus	Thymus
33	chr13:52606000-52609400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr13:52606000-52615800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr13:52606000-52618000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr13:52608800-52610200	Weak transcription	Pancreas	Pancrea
37	chr13:52609000-52609400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr13:52609000-52610600	Enhancers	HepG2	liver
39	chr13:52609200-52609600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links