Variant report

Variant	rs6106398
Chromosome Location	chr20:21706605-21706606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11699081	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6047604	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6047607	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73900336	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912814	chr20:21703615-21946928	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21705000-21708200	Enhancers	Placenta	Placenta
2	chr20:21705600-21707600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:21706200-21707200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr20:21706200-21707200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:21706400-21707000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr20:21706400-21707000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:21706400-21707200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr20:21706600-21707000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr20:21706600-21707000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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