Variant report

Variant	rs6106434
Chromosome Location	chr20:21949593-21949594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11696707	0.86[EUR][1000 genomes]
rs11699227	0.86[ASN][1000 genomes]
rs1555264	0.86[ASN][1000 genomes]
rs1555265	0.86[ASN][1000 genomes]
rs169311	0.86[ASN][1000 genomes]
rs1986765	0.86[ASN][1000 genomes]
rs1988545	0.86[ASN][1000 genomes]
rs2009652	0.84[ASN][1000 genomes]
rs201547	0.84[ASN][1000 genomes]
rs201548	0.84[ASN][1000 genomes]
rs2254540	0.88[ASN][1000 genomes]
rs2328684	0.81[ASN][1000 genomes]
rs2424418	0.86[ASN][1000 genomes]
rs2424419	0.86[ASN][1000 genomes]
rs2424421	0.84[ASN][1000 genomes]
rs2424423	0.84[ASN][1000 genomes]
rs2424427	0.81[ASN][1000 genomes]
rs6036003	0.84[ASN][1000 genomes]
rs6036007	0.84[ASN][1000 genomes]
rs6047748	0.80[ASN][1000 genomes]
rs6047768	0.86[ASN][1000 genomes]
rs6047769	0.86[ASN][1000 genomes]
rs6047798	0.81[ASN][1000 genomes]
rs6106438	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv912815	chr20:21884693-21953649	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv585715	chr20:21906780-21951847	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv585716	chr20:21906780-21967950	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585717	chr20:21917393-21949593	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv458947	chr20:21917393-21961410	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv585718	chr20:21917393-21961410	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21949400-21951800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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