Variant report

Variant	rs61065093
Chromosome Location	chr3:113228180-113228181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113224955..113227049-chr3:113228113..113230944,2	K562	blood:
2	chr3:113226745..113229675-chr3:113232290..113234085,2	K562	blood:
3	chr3:113221446..113223983-chr3:113226030..113229483,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10511325	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11917149	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11917288	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919330	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11920635	0.88[AFR][1000 genomes]
rs11920725	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11922838	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11923128	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11924109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926687	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1463639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1513288	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16860962	1.00[EUR][1000 genomes]
rs16861014	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861023	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16861025	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861032	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861077	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16861109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861217	0.87[EUR][1000 genomes]
rs17255950	0.91[EUR][1000 genomes]
rs17256551	0.94[EUR][1000 genomes]
rs17256752	0.94[EUR][1000 genomes]
rs17322613	0.94[EUR][1000 genomes]
rs17325024	0.87[EUR][1000 genomes]
rs1906141	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1989359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2129431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2129432	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2271496	0.87[EUR][1000 genomes]
rs2291412	0.94[EUR][1000 genomes]
rs2306068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28472841	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35758075	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35812463	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56685963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56772417	0.91[EUR][1000 genomes]
rs57115529	0.94[EUR][1000 genomes]
rs57164268	0.94[EUR][1000 genomes]
rs57366942	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58905600	0.94[EUR][1000 genomes]
rs58988763	0.91[EUR][1000 genomes]
rs59271111	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59493419	0.94[EUR][1000 genomes]
rs59673391	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60582065	0.84[EUR][1000 genomes]
rs60697865	0.91[EUR][1000 genomes]
rs60940543	0.94[EUR][1000 genomes]
rs61575357	0.87[EUR][1000 genomes]
rs61594119	0.84[EUR][1000 genomes]
rs6438150	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6438151	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6783691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs735	0.91[EUR][1000 genomes]
rs7610552	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113160800-113232600	Weak transcription	Right Ventricle	heart
2	chr3:113172800-113232800	Weak transcription	HSMMtube	muscle
3	chr3:113176400-113233200	Weak transcription	Gastric	stomach
4	chr3:113179600-113232400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:113179600-113232800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:113184000-113233200	Weak transcription	Pancreas	Pancrea
7	chr3:113201400-113232600	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:113202400-113232800	Weak transcription	Fetal Brain Female	brain
9	chr3:113203400-113229200	Weak transcription	Lung	lung
10	chr3:113204400-113230600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:113204600-113232800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:113204600-113233200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:113204600-113233200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:113204600-113233200	Weak transcription	Esophagus	oesophagus
15	chr3:113204800-113232400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:113204800-113232600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:113204800-113232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:113204800-113233200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:113207600-113232600	Weak transcription	NHEK	skin
20	chr3:113207600-113233000	Weak transcription	Psoas Muscle	Psoas
21	chr3:113207800-113233000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:113209000-113232600	Weak transcription	Fetal Kidney	kidney
23	chr3:113209200-113232800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:113209400-113232800	Weak transcription	Stomach Mucosa	stomach
25	chr3:113209800-113228800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:113209800-113232800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:113210000-113233000	Weak transcription	HSMM	muscle
28	chr3:113210200-113233200	Weak transcription	Colonic Mucosa	Colon
29	chr3:113210400-113231600	Weak transcription	Fetal Intestine Small	intestine
30	chr3:113210400-113232600	Weak transcription	NHLF	lung
31	chr3:113212200-113232800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:113212400-113232600	Weak transcription	Brain Angular Gyrus	brain
33	chr3:113212400-113232600	Weak transcription	NHDF-Ad	bronchial
34	chr3:113216000-113232600	Weak transcription	HMEC	breast
35	chr3:113217400-113232400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:113217600-113232800	Weak transcription	Brain Anterior Caudate	brain
37	chr3:113217800-113232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:113217800-113232400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:113217800-113232800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr3:113217800-113233000	Weak transcription	Small Intestine	intestine
41	chr3:113218200-113232600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:113218200-113232600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:113218200-113232800	Weak transcription	NH-A	brain
44	chr3:113218400-113232600	Weak transcription	Osteobl	bone
45	chr3:113218400-113232800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:113218400-113232800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:113218400-113232800	Weak transcription	Fetal Intestine Large	intestine
48	chr3:113219000-113232600	Weak transcription	HUVEC	blood vessel
49	chr3:113221400-113232000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr3:113221400-113232400	Weak transcription	Fetal Lung	lung

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