Variant report

Variant	rs61066191
Chromosome Location	chr1:217270219-217270220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1166347	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1166350	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1166351	0.97[ASN][1000 genomes]
rs1318282	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1502357	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2252089	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2789579	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6656214	0.96[ASN][1000 genomes]
rs6682972	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs830310	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs905292	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428610	chr1:217143317-217307243	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv549205	chr1:217165548-217270219	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217264000-217271800	Weak transcription	Pancreas	Pancrea
2	chr1:217264400-217270800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:217266200-217271200	Weak transcription	Fetal Heart	heart
4	chr1:217266200-217271400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:217266200-217271800	Weak transcription	Fetal Intestine Large	intestine
6	chr1:217269600-217270600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:217270000-217270400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:217270200-217270400	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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